None of them are grammatically correct because none of them are complete thoughts let alone sentences.
All three try to specify the particular monkey by enumerating that it can see your ears but do no more.
Take away the description of the monkeys ability to see your ears and what you’re left with is “the monkey”.
“The monkey” isn’t a sentence.
If you are the subject and what’s happening is that you’re wondering if the monkey can see your ears then the sentence you want is “I’m wondering if the monkey can see my ears.”
If, as I suspect, you’re using “the monkey whose ability to see my ears I’m wondering about” as the subject of some larger more complex and cool sentence then you gotta lay out that part before someone can give solid grammatical advice.
“The monkey about whose ability to see my ears I’m wondering”.
Part of the issue is that the thing you’re wondering about needs to be a noun, but the verb “can” doesn’t have an infinitive or gerund form (that is, there’s no purely grammatical way to convert it to a noun, like *“to can” or *“canning”). We generally substitute some form of “to be able to”, but it’s not something our brain does automatically.
Also, there’s an implied pragmatic context that some of the other comments seem to be overlooking:
The speaker is apparently replying to a question asking them to indicate one monkey out of several possibilities
The other party is already aware of the speaker’s doubts about a particular monkey's ear-seeing ability
The reason this doubt is being mentioned now is to identify the monkey, not to express the doubt.
I use "they/them" for any animal/sentient being (whether or not they're human) rather than "it" in order to avoid objectifying them, but I recognise this is not standard English. I also use "who" instead of "which" (A monkey/dolphin/dog/goat who (...) rather than a monkey which (...), etc) and basically any of the personal pronouns or words you would use for a human rather than an object (or I guess typically nonhuman animals). It's a deliberate deviation from grammatical rules/traditional language for the sake of aligning with my personal beliefs & ethics about animal rights/vegan stuff. You can just ignore that part though because it's just a force of habit, I actually forgot that would seem weird since it's normal to me, the real confusion I had was with the overall sentence structure & how to phrase it; it still doesn't sound right to me whether you use "it" or "they".
The third looks okay to me, but beware I'm not a native speaker so perhaps I think it's grammatically correct but it's not.
By the way, the sentence feels silly out of context as you present it, and doesn't make much sense by itself but I'm hoping you have some context that frames it such as another character asking "Who are you looking for?" and a story that explains why you would even be concerned they can see your ears. Maybe it's an ear-eating monkey that gets triggered when they see ears. Or maybe they can shoot laser beams with their eyes but only aimed at people's ears. I don't know. There's a reason I'm not a writer.
Generally with animals the "it" pronoun fits best, but i think they phrase itself need reworking, i understand that you can't today say but i think it's a difficult way toc phrase it the way toc wrote it.
Maybe "this is the monkey I suspect is seeing my ears"
I use "they/them" for any animal/sentient being (whether or not they're human) rather than "it" in order to avoid objectifying them, but I recognise this is not standard English. I also use "who" instead of "which" (A monkey/dolphin/dog/goat who (...) rather than a monkey which (...), etc) and basically any of the personal pronouns or words you would use for a human rather than an object (or I guess typically nonhuman animals). It's a deliberate deviation from grammatical rules/traditional language for the sake of aligning with my personal beliefs & ethics about animal rights/vegan stuff. You can just ignore that part though because it's just a force of habit, I actually forgot that would seem weird since it's normal to me, the real confusion I had was with the overall sentence structure & how to phrase it; it still doesn't sound right to me whether you use "it" or "they".
If your wondering isn't critical to the thought I would simplify to "the monkey who might be able to see my ears" or "can possibly see my ears". Otherwise AbouBenAdhem has the best option, though I might also suggest "The monkey whose ability to see my ears I'm wondering about"; splitting the prepositional phrase is more strictly proper but I think it reads a little better like this.
The phrase "I'm wondering if... can..." needs a noun or pronoun between "if" and "can". As soon as you try to remove that (by moving it out to "The monkey who..."), the phrase stops being grammatical. We'd understand you, but it would require significant effort to parse the sentence. That seems to be what makes this sound strange, no matter what we try to do with it.
I don't know whether other languages can do this, but English can't.